Publications

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2009
"Time-Resolved Tracking of a Minimum Gene Expression System Reconstituted in Giant Liposomes"
Hirohide Saito, Yusho Kato, Mael Le Berre, Ayako Yamada, Tan Inoue, Kenichi Yoshikawa and Damien Baigl, ChemBioChem, 10(10), 1640–1643 (2009)
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doi:10.1002/cbic.200900205
"Removal of histone tails from nucleosome dissects the physical mechanisms of salt-induced aggregation, linker histone H1-induced compaction, and 30-nm fiber formation of the nucleosome array"
Kohji Hizume, Tonau Nakai, Sumiko Araki, Eloise Prieto, Kenichi Yoshikawa and Kunio Takeyasu, Ultramicroscopy, 109(8), 868–873 (2009)
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doi:10.1016/j.ultramic.2009.03.014
"Extended continuous-flow stirred-tank reactor (ECSTR) as a simple model of life under thermodynamically open conditions"
Masahiro Takinoue, Yue Ma, Yoshihito Mori and Kenichi Yoshikawa, Chemical Physics Letters, 476(4-6), 323–328 (2009)
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doi:10.1016/j.cplett.2009.06.018
"Self-Propelled Motion of a Droplet Induced by Marangoni-Driven"
Yongjun Chen, Yuko Nagamine and Kenichi Yoshikawa, Physical Review E, 80(1), 016303/1–7 (2009)
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doi:10.1103/physreve.80.016303
"Cisplatin and its analogues induce a significant change in the higher-order structure of long duplex DNA"
Yousuke Katsuda, Yuko Yoshikawa, Takaji Sato, Yoshihiro Saito, Masahiko Chikuma, Mari Suzuki and Kenichi Yoshikawa, Chemical Physics Letters, 473(1-3), 155–159 (2009)
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doi:10.1016/j.cplett.2009.03.026
"Self-sustained collective oscillation generated in an array of nonoscillatory cells"
Yue Ma and Kenichi Yoshikawa, Physical Review E, 79(4), 046217/1–11 (2009)
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doi:10.1103/physreve.79.046217
"Emergence of Superstructures from a Homogeneous Lipid Sphere"
Makiko Negishi, Hiroyuki Kitahata and Kenichi Yoshikawa, Journal of Physical Chemistry B, 113(11), 3264–3268 (2009)
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doi:10.1021/jp8113623
"Nanopore formation on unilamellar vesicles of long- and short-chain lipids"
Norifumi L. Yamada, Mafumi Hishida and Naoya Torikai, Physical Review E, 79(3), 032902/1–4 (2009)
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doi:10.1103/physreve.79.032902
"Small anion with higher valency retards the compaction of DNA in the presence of multivalent cation"
Takuya Saito, Takafumi Iwaki and Kenichi Yoshikawa, Biophysical Journal, 96(3), 1068–1075 (2009)
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doi:10.1016/j.bpj.2008.11.008
"Liberation of a pinned spiral wave by a single stimulus in excitable media"
Marcel Hörning, Akihiro Isomura, Konstantin Agladze and Kenichi Yoshikawa, Physical Review E, 79(2), 026218/1–11 (2009)
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doi:10.1103/physreve.79.026218
"Constrction of Exotic Microstructure from Nanoscale Molecular Assembly"
Masatoshi Ichikawa and Kenichi Yoshikawa, In BOTTOM-UP NANOFABRICATION (American Scientific Publishers), 4, Chapter 7, pp. 167–188 (2009)
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2008
"Eliminating spiral waves pinned to an anatomical obstacle in cardiac myocytes by high-frequency stimuli"
Akihiro Isomura, Marcel Hörning, Konstantin Agladze and Kenichi Yoshikawa, Physical Review E, 78(6), 066216/1–6 (2008)
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doi:10.1103/physreve.78.066216
"Homogenization of a Phase-Separated Droplet in a Polymer Mixture Caused by the Dielectric Effect of a Laser"
Hirofumi Toyama, Kenichi Yoshikawa and Hiroyuki Kitahata, Physical Review E, 78(6), 060801/1–4 (2008)
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doi:10.1103/physreve.78.060801
"Contraction-induced cluster formation in cardiac cell culture"
Takahiro Harada, Akihiro Isomura and Kenichi Yoshikawa, Physica D, 237(21), 2787–2796 (2008)
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doi:10.1016/j.physd.2008.04.013
"DNA compaction induced by neutral polymer is retarded more effectively by divalent anion than monovalent anion"
Takuya Saito, Takafumi Iwaki and Kenichi Yoshikawa, Chemical Physics Letters, 465(1-3), 40–44 (2008)
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doi:10.1016/j.cplett.2008.09.040
"Entrapping Desired Amounts of Actin Filaments and Molecular Motor Proteins in Giant Liposomes"
Kingo Takiguchi, Ayako Yamada, Makiko Negishi, Yohko Tanaka-Takiguchi and Kenichi Yoshikawa, Langmuir, 24(20), 11323–11326 (2008)
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doi:10.1021/la802031n
"Photochemical Metallization of DNA"
Anatoly A. Zinchenko, Ning Chen and Shizuaki Murata, Chemistry Letters, 37(10), 1096–1097 (2008)
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doi:10.1246/cl.2008.1096
"Rhythmic oscillation and dynamic instability of micrometer-size phase separation under continuous photon flux by a focused laser"
Koichiro Sadakane, Hiroyuki Kitahata, Hideki Seto and Kenichi Yoshikawa, Physical Review E, 78(4), 046214/1–4 (2008)
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doi:10.1103/physreve.78.046214
"Folding Transition of a Single Semiflexible Polyelectrolyte Chain through Toroidal Bundling of Loop Structures"
Takafumi Iwaki, Naoko Makita and Kenichi Yoshikawa, Journal of Chemical Physics, 129(6), 065103 (2008)
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doi:10.1063/1.2967860
"How Does the Mobility of Phospholipid Molecules at a Water/Oil Interface Reflect the Viscosity of the Surrounding Oil?"
Makiko Negishi, Hideki Seto, Masahiko Hase and Kenichi Yoshikawa, Langmuir, 24(16), 8431–8434 (2008)
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doi:10.1021/la8015172
"Chain length dependence of folding transition in a semiflexible homo-polymer chain: Appearance of a core-shell structure"
Yuji Higuchi, Takahiro Sakaue and Kenichi Yoshikawa, Chemical Physics Letters, 461(1-3), 42–46 (2008)
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doi:10.1016/j.cplett.2008.06.068
"Conformational Behavior of Giant DNA through Binding with Ag+ and Metallization"
Anatoly A. Zinchenko, Damien Baigl, Ning Chen, Pyshkina Olga, Kazunaka Endo, Vladimir G. Sergeyev and Kenichi Yoshikawa, Biomacromolecules, 9(7), 1981–1987 (2008)
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doi:10.1021/bm800235j
"The nature of the normal form map for soft impacting systems"
Yue Ma, James Ing, Soumitro Banerjee, Marian Wiercigroch and Ekaterina Pavlovskaia, International Journal of Non-Linear Mechanics, 43(6), 504–513 (2008)
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doi:10.1016/j.ijnonlinmec.2008.04.001
"Self-motion of an oil droplet: A simple physicochemical model of active Brownian motion"
Yutaka Sumino and Kenichi Yoshikawa, Chaos, 18(2), 026106/1–9 (2008)
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doi:10.1063/1.2943646
"ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli"
Ning Chen, Anatoly A. Zinchenko, Yuko Yoshikawa, Sumiko Araki, Shun Adachi, Mitsuyoshi Yamazoe, Sota Hiraga and Kenichi Yoshikawa, Journal of Bacteriology, 190(10), 3731–3737 (2008)
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doi:10.1128/jb.01863-07
"Photocontrol of Single-Chain DNA Conformation in Cell-Mimicking Microcompartments"
Matthieu Sollogoub, Samuel Guieu, Marie Geoffroy, Ayako Yamada, André Estévez-Torres, Kenichi Yoshikawa and Damien Baigl, ChemBioChem, 9(8), 1201–1206 (2008)
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doi:10.1002/cbic.200800072
"Oscillation of a water surface in contact with a fixed camphor disk"
Hiroyuki Kitahata, Kouhei Kawata, Yutaka Sumino and Satoshi Nakata, Chemical Physics Letters, 457(1-3), 254–258 (2008)
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doi:10.1016/j.cplett.2008.03.075
"Bending modulus of lipid bilayers in liquid-crystalline phase including anomalous swelling regime estimated by NSE experiments"
Hideki Seto, Norifumi L. Yamada, Michihiro Nagao, Mafumi Hishida and Takayoshi Takeda, The European Physical Journal E - Soft Matter, 26(1-2), 217–223 (2008)
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doi:10.1140/epje/i2007-10315-0
"Generation of multiple circular walls on a thin film of nematic liquid crystal by laser scanning"
Masahiro Kojima, Jun Yamamoto, Koichiro Sadakane and Kenichi Yoshikawa, Chemical Physics Letters, 457(1-3), 130–133 (2008)
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doi:10.1016/j.cplett.2008.03.063
"Single DNA Molecules: Compaction and Decompaction"
Anatoly A. Zinchenko, Olga A. Pyshkina, Lezov V. Andrey, Vladimir G. Sergeyev and Kenichi Yoshikawa, In DNA Interactions with Polymers and Surfactants (John Wiley & Sons, Inc), Chapter 3, pp. 59–88 (2008)
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